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Barplot of species abundance

Source: R/fct_plot.R
plot_species_bars.Rd

Plot species abundance as a barplot.

Usage

plot_species_bars(
  df,
  spp_col,
  count_col = NULL,
  obstype_col = NULL,
  interactive = FALSE,
  NA_count_placeholder = NA
)

Arguments

df

The dataframe

spp_col

Name of the species column

count_col

Name of the count column (optional). If missing, it will be assumed to be 1 for all observations.

obstype_col

Name of the observation type column (optional). If it is present, the function will plot only the observations for which obstype_col is "animal".

interactive

Logical; make the plot interactive with ggiraph?

NA_count_placeholder

Value with which to replace NAs present in the column containing counts. If not specified, NA is the default and species which have NA in counts will have a NA count.

Value

A ggplot object representing horizontal bars of species count. The x-axis is the observed number of individuals and the y-axis are the different species.

See also

vignette("plots", package = "camtrapviz")

Examples

data("recordTableSample", package = "camtrapR")
plot_species_bars(recordTableSample,
                  spp_col = "Species")